Using SMILES string c1cc(c(cc1CCN)O)O ############################################################################ ## [grade] produce ligand dictionary using mogul and QM methods ############################################################################ Copyright (C) 2010-11 by Global Phasing Limited All rights reserved. This software is proprietary to and embodies the confidential technology of Global Phasing Limited (GPhL). Possession, use, duplication or dissemination of the software is authorised only pursuant to a valid written licence from GPhL. Version: 1.1.1 <2011-06-10> Authors: Smart OS, Womack, TO, Sharff A, Flensburg C, Keller P, Paciorek W, Vonrhein C and Bricogne G (2010-11) To cite: see http://www.globalphasing.com/buster/wiki/index.cgi?GradeCite ------------------------------------------------------------------------------ Acknowledgements: mogul: http://www.ccdc.cam.ac.uk/products/csd_system/mogul/ libcheck: http://www.ccp4.ac.uk/html/libcheck.html QM method uses fdynamo library http://www.pdynamo.org/ to perform calculations using the RM1 method http://www.rm1.sparkle.pro.br/ Generated initial CIF file from SMILES using libcheck Vers 5.1.14 ; 01.10.2010 All hydrogens have type H; fixing this based on the atom they're bonded to Making PDB from initial dictionary Loaded hybridisations for 55 atom types from /home/software/xtal/Server/beta/20120125/autoBUSTER/grade-data/ccp4_atomtype_hybridisation.dat Setting quantum charge to 0 (found from SMILES string) Making PDB after quantum phase Generated CIF grade-LIG.cif and PDB grade-LIG.pdb